{
  "$schema": "http://json-schema.org/draft-04/schema#",
  "$id": "https://schema.humancellatlas.org/type/process/sequencing/5.1.0/sequencing_process",
  "id": "https://schema.humancellatlas.org/type/process/sequencing/5.1.0/sequencing_process",
  "description": "Information about how a biomaterial was sequenced.",
  "additionalProperties": false,
  "required": [
    "describedBy",
    "schema_type",
    "process_core",
    "instrument_manufacturer_model",
    "paired_ends"
  ],
  "title": "sequencing_process",
  "type": "object",
  "properties": {
    "describedBy": {
      "description": "The URL reference to the schema.",
      "type": "string",
      "pattern": "https://schema.humancellatlas.org/type/process/sequencing/[0-9]{1,}.[0-9]{1,}.[0-9]{1,}/sequencing_process"
    },
    "schema_version": {
      "description": "The version number of the schema in major.minor.patch format.",
      "type": "string",
      "pattern": "^[0-9]{1,}.[0-9]{1,}.[0-9]{1,}$",
      "example": "4.6.1"
    },
    "schema_type": {
      "description": "The type of the metadata schema entity.",
      "type": "string",
      "enum": [
        "process"
      ]
    },
    "process_core": {
      "description": "Core process-level information.",
      "type": "object",
      "$ref": "https://schema.humancellatlas.org/core/process/5.1.0/process_core"
    },
    "instrument_manufacturer_model": {
      "description": "The manufacturer and model of the sequencer used. Should be a child term of https://www.ebi.ac.uk/ols/ontologies/efo/terms?iri=http%3A%2F%2Fwww.ebi.ac.uk%2Fefo%2FEFO_0000548.",
      "type": "object",
      "$ref": "https://schema.humancellatlas.org/module/ontology/5.1.0/instrument_ontology",
      "example": "Illumina HiSeq 4000",
      "user_friendly": "Instrument manufacturer and model"
    },
    "local_machine_name": {
      "description": "Local name for the particular machine on which the biomaterial was sequenced.",
      "type": "string",
      "user_friendly": "Local machine name"
    },
    "paired_ends": {
      "description": "Was a paired-end sequencing strategy used? Must be either yes or no.",
      "type": "boolean",
      "example": "yes",
      "comment": "If 10x, then put no.",
      "user_friendly": "Paired ends?"
    },
    "insdc_experiment": {
      "description": "An INSDC (International Nucleotide Sequence Database Collaboration) experiment accession. Accession must start with DRX, ERX, or SRX.",
      "pattern": "^[D|E|S]RX[0-9]+$",
      "type": "string",
      "user_friendly": "INSDC experiment"
    },
    "smartseq2": {
      "description": "Fields specific for SmartSeq2 experiments.",
      "type": "object",
      "$ref": "https://schema.humancellatlas.org/module/process/sequencing/5.1.0/smartseq2"
    },
    "process_type": {
      "description": "The type of process. Should be a child term of https://www.ebi.ac.uk/ols/ontologies/efo/terms?iri=http%3A%2F%2Fwww.ebi.ac.uk%2Fefo%2FEFO_0002694.",
      "type": "object",
      "$ref": "https://schema.humancellatlas.org/module/ontology/5.1.0/process_type_ontology",
      "user_friendly": "Process type"
    }
  }
}