{
  "$schema": "http://json-schema.org/draft-07/schema#",
  "$id": "https://schema.humancellatlas.org/type/protocol/sequencing/10.0.2/sequencing_protocol",
  "description": "Information about the sequencing protocol.",
  "additionalProperties": false,
  "required": [
    "describedBy",
    "schema_type",
    "protocol_core",
    "instrument_manufacturer_model",
    "paired_end",
    "method"
  ],
  "title": "Sequencing protocol",
  "name": "sequencing_protocol",
  "type": "object",
  "properties": {
    "describedBy": {
      "description": "The URL reference to the schema.",
      "type": "string",
      "pattern": "^(http|https)://schema.(.*?)humancellatlas.org/type/protocol/sequencing/(([0-9]{1,}.[0-9]{1,}.[0-9]{1,})|([a-zA-Z]*?))/sequencing_protocol"
    },
    "schema_version": {
      "description": "The version number of the schema in major.minor.patch format.",
      "type": "string",
      "pattern": "^[0-9]{1,}.[0-9]{1,}.[0-9]{1,}$",
      "example": "4.6.1"
    },
    "schema_type": {
      "description": "The type of the metadata schema entity.",
      "type": "string",
      "enum": [
        "protocol"
      ]
    },
    "provenance": {
      "description": "Provenance information provided by the system.",
      "type": "object",
      "$ref": "https://schema.humancellatlas.org/system/1.0.4/provenance"
    },
    "protocol_core": {
      "description": "Core protocol-level information.",
      "type": "object",
      "$ref": "https://schema.humancellatlas.org/core/protocol/5.2.5/protocol_core",
      "user_friendly": "Protocol core"
    },
    "instrument_manufacturer_model": {
      "description": "The manufacturer and model of the sequencer.",
      "type": "object",
      "$ref": "https://schema.humancellatlas.org/module/ontology/5.3.5/instrument_ontology",
      "user_friendly": "Instrument manufacturer and model"
    },
    "local_machine_name": {
      "description": "Local name for the particular machine used for sequencing.",
      "type": "string",
      "user_friendly": "Local machine name",
      "example": "Machine1; HSMA-20"
    },
    "paired_end": {
      "description": "Whether the sequenced molecule was sequenced from both ends.",
      "type": "boolean",
      "example": "Should be one of: yes, or no.",
      "guidelines": "If 3' 10x v2 was used, enter no.",
      "user_friendly": "Paired end"
    },
    "method": {
      "description": "The general method for sequencing.",
      "type": "object",
      "$ref": "https://schema.humancellatlas.org/module/ontology/1.1.4/sequencing_ontology",
      "user_friendly": "Sequencing method"
    },
    "10x": {
      "description": "Fields specific for 10x experiments.",
      "type": "object",
      "$ref": "https://schema.humancellatlas.org/module/process/sequencing/1.0.5/10x",
      "user_friendly": "10x-specific"
    }
  }
}